CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr17.430 rna-evm.model.Chr17.430 Chr17 13079617 13081120 PREDICTED: Vitelline membrane outer layer protein 1 nan K25745
gene-evm.TU.Chr17.431 rna-evm.model.Chr17.431 Chr17 13087167 13113750 PREDICTED: X-ray repair cross-complementing protein 5 GO:0003677;GO:0003678;GO:0006303;GO:0016817 K10885
gene-evm.TU.Chr17.432 rna-evm.model.Chr17.432 Chr17 13120323 13127045 PREDICTED: Zinc finger protein 658B GO:0003676 K10500
gene-evm.TU.Chr17.433 rna-evm.model.Chr17.433 Chr17 13132468 13146178 PREDICTED: Hydroxyacid-oxoacid transhydrogenase, mitochondrial GO:0016491;GO:0046872;GO:0055114 K11173
gene-evm.TU.Chr17.435 rna-evm.model.Chr17.435 Chr17 13150717 13153827 PREDICTED: 2-5A-dependent ribonuclease GO:0005515 K06867
gene-evm.TU.Chr17.438 rna-evm.model.Chr17.438 Chr17 13165233 13169985 PREDICTED: 2-5A-dependent ribonuclease GO:0005515 K06867
gene-evm.TU.Chr17.439 rna-evm.model.Chr17.439 Chr17 13248589 13267331 PREDICTED: Calmodulin GO:0005509 K02183
gene-evm.TU.Chr17.44 rna-evm.model.Chr17.44 Chr17 1818960 1841025 PREDICTED: Sorting nexin-19 GO:0035091 K17930
gene-evm.TU.Chr17.440 rna-evm.model.Chr17.440 Chr17 13305897 13308961 uncharacterized protein nan nan
gene-evm.TU.Chr17.441 rna-evm.model.Chr17.441 Chr17 13310869 13314420 uncharacterized protein nan K19678

For more detailed data, you can explore the Download section to access the full dataset.