CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr17.417 rna-evm.model.Chr17.417 Chr17 12840127 12848113 PREDICTED: 1-deoxyxylulose-5-phosphate synthase YajO nan K23107
gene-evm.TU.Chr17.418 rna-evm.model.Chr17.418 Chr17 12867801 12868952 uncharacterized protein nan K20338
gene-evm.TU.Chr17.420 rna-evm.model.Chr17.420 Chr17 12897742 12907845 PREDICTED: Mediator of RNA polymerase II transcription subunit 30 nan K15143
gene-evm.TU.Chr17.422 rna-evm.model.Chr17.422 Chr17 12945694 12955267 PREDICTED: Phosducin-like protein 3 nan K08327
gene-evm.TU.Chr17.423 rna-evm.model.Chr17.423 Chr17 12958243 12963104 PREDICTED: Putative nuclease HARBI1 nan K23222
gene-evm.TU.Chr17.424 rna-evm.model.Chr17.424 Chr17 12966142 12987525 PREDICTED: COX assembly mitochondrial protein 1 nan K18171
gene-evm.TU.Chr17.425 rna-evm.model.Chr17.425 Chr17 12991650 13003807 uncharacterized protein nan K11244
gene-evm.TU.Chr17.427 rna-evm.model.Chr17.427 Chr17 13032073 13045319 PREDICTED: Vitelline membrane outer layer protein 1 homolog nan K25745
gene-evm.TU.Chr17.428_evm.TU.Chr17.429 rna-evm.model.Chr17.428_evm.model.Chr17.429 Chr17 13056394 13076037 PREDICTED: Protein Mpv17 GO:0016020 K13348
gene-evm.TU.Chr17.43 rna-evm.model.Chr17.43 Chr17 1790806 1793449 uncharacterized protein nan K20466

For more detailed data, you can explore the Download section to access the full dataset.