CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr17.406 rna-evm.model.Chr17.406 Chr17 12643870 12649136 uncharacterized protein nan K26256
gene-evm.TU.Chr17.407 rna-evm.model.Chr17.407 Chr17 12651726 12653630 PREDICTED: Solute carrier family 23 member 2 GO:0016020;GO:0022857;GO:0055085 K14611
gene-evm.TU.Chr17.408 rna-evm.model.Chr17.408 Chr17 12653695 12654064 PREDICTED: Solute carrier family 23 member 2 nan K14611
gene-evm.TU.Chr17.409 rna-evm.model.Chr17.409 Chr17 12655855 12663119 PREDICTED: 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] GO:0016020 K24190
gene-evm.TU.Chr17.410 rna-evm.model.Chr17.410 Chr17 12694044 12701456 PREDICTED: Toll-like receptor 3 GO:0001819;GO:0002756;GO:0003725;GO:0004888;GO:0005515;GO:0007165;GO:0016020;GO:0032722;GO:0034138;GO:0043330;GO:0045087;GO:0050729;GO:0051607 K05401
gene-evm.TU.Chr17.411 rna-evm.model.Chr17.411 Chr17 12714262 12723157 PREDICTED: Zinc finger and BTB domain-containing protein 49 GO:0003676 K24807
gene-evm.TU.Chr17.412 rna-evm.model.Chr17.412.1 Chr17 12729206 12808157 PREDICTED: Protein scribble homolog GO:0005515 K16175
gene-evm.TU.Chr17.413 rna-evm.model.Chr17.413 Chr17 12813270 12821552 PREDICTED: Proteasome inhibitor PI31 subunit nan K06700
gene-evm.TU.Chr17.415 rna-evm.model.Chr17.415 Chr17 12826968 12828065 PREDICTED: protein JBTS17 nan K13254
gene-evm.TU.Chr17.416 rna-evm.model.Chr17.416 Chr17 12828509 12836680 PREDICTED: 1-deoxyxylulose-5-phosphate synthase YajO nan K23107

For more detailed data, you can explore the Download section to access the full dataset.