CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr17.392 rna-evm.model.Chr17.392 Chr17 12108603 12109933 PREDICTED: Transposable element Tc1 transposase nan K07494
gene-evm.TU.Chr17.393 rna-evm.model.Chr17.393 Chr17 12114742 12127013 PREDICTED: 60S acidic ribosomal protein P0 GO:0042254 K02941
gene-evm.TU.Chr17.394 rna-evm.model.Chr17.394 Chr17 12151387 12171550 PREDICTED: Calpain-8 GO:0004198;GO:0006508 K08585
gene-evm.TU.Chr17.395 rna-evm.model.Chr17.395 Chr17 12176410 12192837 PREDICTED: Gametocyte-specific factor 1 nan K13156
gene-evm.TU.Chr17.396 rna-evm.model.Chr17.396 Chr17 12212537 12223312 PREDICTED: ATP-binding cassette, subfamily C (CFTR/MRP), member 1 [EC:7.6.2.3] nan K13156
gene-evm.TU.Chr17.4 rna-evm.model.Chr17.4 Chr17 160551 163709 PREDICTED: serine/threonine-protein kinase 11-interacting protein-like nan nan
gene-evm.TU.Chr17.400 rna-evm.model.Chr17.400 Chr17 12331531 12334188 PREDICTED: AF4/FMR2 family member 4 nan K16512
gene-evm.TU.Chr17.401 rna-evm.model.Chr17.401 Chr17 12334200 12334460 PREDICTED: AF4/FMR2 family member 4 nan K11126
gene-evm.TU.Chr17.403 rna-evm.model.Chr17.403 Chr17 12615966 12625325 PREDICTED: BTB and MATH domain-containing protein 38 GO:0005515 K10463
gene-evm.TU.Chr17.405 rna-evm.model.Chr17.405 Chr17 12638820 12642218 PREDICTED: Solute carrier family 23 member 2 GO:0016020;GO:0022857;GO:0055085 K14611

For more detailed data, you can explore the Download section to access the full dataset.