CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr17.369 rna-evm.model.Chr17.369 Chr17 11375626 11378145 PREDICTED: sorting nexin-13 nan nan
gene-evm.TU.Chr17.37 rna-evm.model.Chr17.37 Chr17 1481601 1484380 PREDICTED: calmodulin GO:0005509 K16466
gene-evm.TU.Chr17.371 rna-evm.model.Chr17.371 Chr17 11632084 11638702 PREDICTED: Two pore potassium channel protein sup-9 GO:0005267;GO:0016020;GO:0071805 K04919
gene-evm.TU.Chr17.372 rna-evm.model.Chr17.372 Chr17 11654705 11663995 PREDICTED: Acetylcholine receptor subunit gamma GO:0004888;GO:0005216;GO:0005230;GO:0006811;GO:0016020;GO:0034220 K04808
gene-evm.TU.Chr17.374 rna-evm.model.Chr17.374 Chr17 11810866 11814624 PREDICTED: Heavy metal-binding protein HIP nan K24236
gene-evm.TU.Chr17.375 rna-evm.model.Chr17.375 Chr17 11817761 11819140 PREDICTED: adenylyltransferase and sulfurtransferase [EC:2.7.7.80 2.8.1.11] nan nan
gene-evm.TU.Chr17.378 rna-evm.model.Chr17.378 Chr17 11837873 11838880 PREDICTED: Psychosine receptor GO:0004930;GO:0007186;GO:0008528;GO:0016020 K08428
gene-evm.TU.Chr17.379 rna-evm.model.Chr17.379 Chr17 11854944 11855140 PREDICTED: Zinc finger protein 846 GO:0003676 K09214
gene-evm.TU.Chr17.38 rna-evm.model.Chr17.38 Chr17 1492990 1493427 PREDICTED: solute carrier family 5 (sodium-dependent multivitamin transporter), member 6 nan K07494
gene-evm.TU.Chr17.380 rna-evm.model.Chr17.380 Chr17 11857891 11894607 PREDICTED: Zinc finger protein 708 GO:0003676 K09228

For more detailed data, you can explore the Download section to access the full dataset.