CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr17.354 rna-evm.model.Chr17.354 Chr17 10710513 10713636 PREDICTED: Vasopressin V1a receptor GO:0004930;GO:0007186;GO:0016020 K08428
gene-evm.TU.Chr17.355 rna-evm.model.Chr17.355 Chr17 10761768 10762142 PREDICTED: starch-binding domain-containing protein 1 nan nan
gene-evm.TU.Chr17.356 rna-evm.model.Chr17.356 Chr17 10762151 10762462 uncharacterized protein nan nan
gene-evm.TU.Chr17.358 rna-evm.model.Chr17.358 Chr17 10865204 10868198 PREDICTED: C1q-related factor nan K23284
gene-evm.TU.Chr17.359 rna-evm.model.Chr17.359 Chr17 10871201 10874692 uncharacterized protein nan K09571
gene-evm.TU.Chr17.36 rna-evm.model.Chr17.36 Chr17 1450458 1450724 PREDICTED: BTB/POZ domain-containing protein KCTD1/15 nan K21754
gene-evm.TU.Chr17.361 rna-evm.model.Chr17.361.3 Chr17 10939205 10961458 PREDICTED: Phytochrome-interacting ankyrin-repeat protein 2 GO:0005515 K06694
gene-evm.TU.Chr17.364 rna-evm.model.Chr17.364 Chr17 11147647 11163561 PREDICTED: Ribose-phosphate pyrophosphokinase 3, chloroplastic GO:0000287;GO:0004749;GO:0009116;GO:0009165 K00948
gene-evm.TU.Chr17.367 rna-evm.model.Chr17.367 Chr17 11291138 11291726 uncharacterized protein GO:0003677 K07483
gene-evm.TU.Chr17.368 rna-evm.model.Chr17.368 Chr17 11362056 11363177 PREDICTED: Neuronal acetylcholine receptor subunit alpha-6 GO:0004888;GO:0005216;GO:0005230;GO:0006811;GO:0016020;GO:0034220 K04808

For more detailed data, you can explore the Download section to access the full dataset.