CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr17.336 rna-evm.model.Chr17.336 Chr17 9920273 9924647 PREDICTED: Recombinase cre GO:0003677;GO:0006310;GO:0015074 K04763
gene-evm.TU.Chr17.337 rna-evm.model.Chr17.337 Chr17 9986434 9997764 PREDICTED: Acetylcholine receptor subunit alpha GO:0005230;GO:0006811;GO:0016020 K04808
gene-evm.TU.Chr17.338 rna-evm.model.Chr17.338 Chr17 10005436 10017005 PREDICTED: Acetylcholine receptor subunit alpha GO:0004888;GO:0005216;GO:0005230;GO:0006811;GO:0016020;GO:0034220 K04808
gene-evm.TU.Chr17.339 rna-evm.model.Chr17.339 Chr17 10040144 10042032 uncharacterized protein nan K10059
gene-evm.TU.Chr17.340 rna-evm.model.Chr17.340 Chr17 10203427 10203846 PREDICTED: histone-lysine N-methyltransferase SETMAR [EC:2.1.1.43] nan nan
gene-evm.TU.Chr17.345 rna-evm.model.Chr17.345 Chr17 10377130 10377399 PREDICTED: sentrin-specific protease 1 [EC:3.4.22.68] nan nan
gene-evm.TU.Chr17.347 rna-evm.model.Chr17.347 Chr17 10406412 10407436 PREDICTED: sentrin-specific protease 1 [EC:3.4.22.68] nan nan
gene-evm.TU.Chr17.348 rna-evm.model.Chr17.348 Chr17 10492496 10495244 PREDICTED: Thyrotropin-releasing hormone receptor GO:0004930;GO:0007186;GO:0016020 K08428
gene-evm.TU.Chr17.352 rna-evm.model.Chr17.352 Chr17 10579543 10582686 PREDICTED: NLR family CARD domain-containing protein 3 nan K13717
gene-evm.TU.Chr17.353 rna-evm.model.Chr17.353 Chr17 10621900 10624619 PREDICTED: Thyrotropin-releasing hormone receptor GO:0004930;GO:0007186;GO:0016020 K08428

For more detailed data, you can explore the Download section to access the full dataset.