CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr17.324 rna-evm.model.Chr17.324 Chr17 9737803 9740741 PREDICTED: Vitelline membrane outer layer protein 1 nan K25745
gene-evm.TU.Chr17.325 rna-evm.model.Chr17.325 Chr17 9749502 9751555 uncharacterized protein nan nan
gene-evm.TU.Chr17.326 rna-evm.model.Chr17.326 Chr17 9758522 9768211 uncharacterized protein GO:0006629;GO:0016627 K09591
gene-evm.TU.Chr17.327 rna-evm.model.Chr17.327 Chr17 9769862 9773673 PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein GO:0000398;GO:0005515;GO:0005689 K13153
gene-evm.TU.Chr17.328 rna-evm.model.Chr17.328 Chr17 9773718 9791857 PREDICTED: Translation initiation factor eIF-2B subunit delta GO:0044237 K03680
gene-evm.TU.Chr17.330 rna-evm.model.Chr17.330 Chr17 9796342 9802009 PREDICTED: Sodium/iodide cotransporter GO:0016020;GO:0022857;GO:0055085 K14386
gene-evm.TU.Chr17.331 rna-evm.model.Chr17.331 Chr17 9806618 9807919 PREDICTED: Acetylcholine receptor subunit alpha GO:0004888;GO:0005216;GO:0005230;GO:0006811;GO:0016020;GO:0034220 K04808
gene-evm.TU.Chr17.332 rna-evm.model.Chr17.332 Chr17 9817312 9818625 PREDICTED: Neuronal acetylcholine receptor subunit alpha-6 GO:0004888;GO:0005216;GO:0005230;GO:0006811;GO:0016020;GO:0034220 K04808
gene-evm.TU.Chr17.333 rna-evm.model.Chr17.333 Chr17 9855863 9864096 PREDICTED: Transmembrane prolyl 4-hydroxylase GO:0005506;GO:0016491;GO:0016705;GO:0031418;GO:0055114 K06711
gene-evm.TU.Chr17.334 rna-evm.model.Chr17.334 Chr17 9880755 9882141 uncharacterized protein nan K04243

For more detailed data, you can explore the Download section to access the full dataset.