CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr17.299 rna-evm.model.Chr17.299 Chr17 8721940 8737552 PREDICTED: Collagen alpha-5(VI) chain nan K06238
gene-evm.TU.Chr17.3 rna-evm.model.Chr17.3 Chr17 84634 101505 PREDICTED: serine/arginine repetitive matrix protein 2 nan K13165
gene-evm.TU.Chr17.30 rna-evm.model.Chr17.30 Chr17 1169140 1178747 PREDICTED: BTB/POZ domain-containing protein KCTD1/15 nan K24675
gene-evm.TU.Chr17.300 rna-evm.model.Chr17.300 Chr17 8739133 8743285 PREDICTED: Collagen alpha-6(VI) chain nan K06238
gene-evm.TU.Chr17.301 rna-evm.model.Chr17.301 Chr17 8747533 8761527 PREDICTED: Probable nuclear hormone receptor HR3 GO:0003700;GO:0005634;GO:0006355;GO:0008270;GO:0043565 K03728
gene-evm.TU.Chr17.302 rna-evm.model.Chr17.302 Chr17 8783755 8786792 uncharacterized protein nan K11676
gene-evm.TU.Chr17.304 rna-evm.model.Chr17.304 Chr17 8809418 8821543 uncharacterized protein nan K25199
gene-evm.TU.Chr17.308 rna-evm.model.Chr17.308 Chr17 8911704 8913362 PREDICTED: (3R)-3-hydroxyacyl-CoA dehydrogenase / 3a,7a,12a-trihydroxy-5b-cholest-24-enoyl-CoA hydratase / enoyl-CoA hydratase 2 [EC:1.1.1.- 4.2.1.107 4.2.1.119] nan K14972
gene-evm.TU.Chr17.309 rna-evm.model.Chr17.309 Chr17 8925330 8963353 PREDICTED: Neuronal acetylcholine receptor subunit alpha-2 GO:0004888;GO:0005216;GO:0005230;GO:0006811;GO:0016020;GO:0034220 K05312
gene-evm.TU.Chr17.31 rna-evm.model.Chr17.31 Chr17 1199608 1200651 PREDICTED: ATP-binding cassette, subfamily C (CFTR/MRP), member 1 [EC:7.6.2.3] nan K18585

For more detailed data, you can explore the Download section to access the full dataset.