CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr17.310 rna-evm.model.Chr17.310 Chr17 8963356 8976154 PREDICTED: Neuronal acetylcholine receptor subunit beta-4 (Fragment) GO:0004888;GO:0005216;GO:0005230;GO:0006811;GO:0016020;GO:0034220 K05312
gene-evm.TU.Chr17.311 rna-evm.model.Chr17.311 Chr17 9027663 9029308 PREDICTED: Neuronal acetylcholine receptor subunit beta-3 GO:0004888;GO:0005216;GO:0005230;GO:0006811;GO:0016020;GO:0034220 K04808
gene-evm.TU.Chr17.313 rna-evm.model.Chr17.313 Chr17 9045918 9059772 PREDICTED: N-lysine methyltransferase KMT5A-A GO:0005515 K11428
gene-evm.TU.Chr17.314 rna-evm.model.Chr17.314 Chr17 9060422 9063857 uncharacterized protein nan nan
gene-evm.TU.Chr17.315 rna-evm.model.Chr17.315 Chr17 9128547 9134395 uncharacterized protein nan nan
gene-evm.TU.Chr17.316 rna-evm.model.Chr17.316 Chr17 9135336 9135665 PREDICTED: Protein PML nan K10054
gene-evm.TU.Chr17.32 rna-evm.model.Chr17.32 Chr17 1207874 1239458 uncharacterized protein nan nan
gene-evm.TU.Chr17.320 rna-evm.model.Chr17.320 Chr17 9564979 9571917 PREDICTED: a disintegrin and metalloproteinase with thrombospondin motifs 10 [EC:3.4.24.-] nan K08621
gene-evm.TU.Chr17.322 rna-evm.model.Chr17.322 Chr17 9617870 9620633 PREDICTED: A disintegrin and metalloproteinase with thrombospondin motifs 16 GO:0004222;GO:0006508 K08632
gene-evm.TU.Chr17.323 rna-evm.model.Chr17.323 Chr17 9716098 9716799 PREDICTED: Mariner Mos1 transposase nan K07494

For more detailed data, you can explore the Download section to access the full dataset.