CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr17.288 rna-evm.model.Chr17.288 Chr17 8294112 8370839 uncharacterized protein nan nan
gene-evm.TU.Chr17.29 rna-evm.model.Chr17.29 Chr17 1168475 1169119 PREDICTED: BTB/POZ domain-containing protein KCTD1/15 nan K21754
gene-evm.TU.Chr17.290 rna-evm.model.Chr17.290 Chr17 8524477 8525133 PREDICTED: ATP-dependent DNA helicase RecQ GO:0003676;GO:0005524 K03654
gene-evm.TU.Chr17.292 rna-evm.model.Chr17.292 Chr17 8527365 8528133 PREDICTED: Chromatin modification-related protein png2 nan nan
gene-evm.TU.Chr17.293 rna-evm.model.Chr17.293 Chr17 8528176 8529114 PREDICTED: Chromatin modification-related protein png2 nan K11379
gene-evm.TU.Chr17.294 rna-evm.model.Chr17.294 Chr17 8530332 8530730 PREDICTED: solute carrier family 23 (nucleobase transporter), member 1/2 nan nan
gene-evm.TU.Chr17.295 rna-evm.model.Chr17.295 Chr17 8530791 8531652 PREDICTED: palmitoyltransferase ZDHHC13/17 [EC:2.3.1.225] GO:0003676 nan
gene-evm.TU.Chr17.296 rna-evm.model.Chr17.296 Chr17 8668676 8672426 uncharacterized protein nan nan
gene-evm.TU.Chr17.297 rna-evm.model.Chr17.297 Chr17 8693230 8694867 PREDICTED: Polypeptide N-acetylgalactosaminyltransferase 1 nan K00710
gene-evm.TU.Chr17.298 rna-evm.model.Chr17.298 Chr17 8708019 8709545 PREDICTED: Polypeptide N-acetylgalactosaminyltransferase 5 nan K00710

For more detailed data, you can explore the Download section to access the full dataset.