CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr17.276 rna-evm.model.Chr17.276 Chr17 7981623 8011474 PREDICTED: T-complex protein 1 subunit alpha GO:0005524 K09493
gene-evm.TU.Chr17.277 rna-evm.model.Chr17.277 Chr17 8022431 8030367 PREDICTED: Probable peptidyl-tRNA hydrolase 2 GO:0004045 K04794
gene-evm.TU.Chr17.278 rna-evm.model.Chr17.278 Chr17 8039054 8045246 uncharacterized protein nan K08769
gene-evm.TU.Chr17.279 rna-evm.model.Chr17.279 Chr17 8056242 8057147 PREDICTED: Ureidoglycolate lyase GO:0000256;GO:0050385 K01483
gene-evm.TU.Chr17.280 rna-evm.model.Chr17.280 Chr17 8060357 8104864 PREDICTED: CUB and sushi domain-containing protein nan nan
gene-evm.TU.Chr17.282 rna-evm.model.Chr17.282 Chr17 8134505 8182157 PREDICTED: Diacylglycerol kinase theta GO:0004143;GO:0007165;GO:0007205;GO:0016301;GO:0035556 K00901
gene-evm.TU.Chr17.283 rna-evm.model.Chr17.283 Chr17 8194298 8220141 PREDICTED: mRNA turnover protein 4 homolog GO:0042254 K14815
gene-evm.TU.Chr17.284 rna-evm.model.Chr17.284 Chr17 8222496 8235618 PREDICTED: 14-3-3-like protein 1 GO:0019904 K16197
gene-evm.TU.Chr17.286 rna-evm.model.Chr17.286 Chr17 8250216 8257911 PREDICTED: Androgen-induced gene 1 protein GO:0016020 K04620
gene-evm.TU.Chr17.287 rna-evm.model.Chr17.287 Chr17 8265600 8290626 PREDICTED: Human immunodeficiency virus type I enhancer-binding protein 2 homolog GO:0003676 K09239

For more detailed data, you can explore the Download section to access the full dataset.