CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr17.263 rna-evm.model.Chr17.263 Chr17 7422829 7433663 PREDICTED: exportin-T nan K08139
gene-evm.TU.Chr17.264 rna-evm.model.Chr17.264 Chr17 7472126 7477956 PREDICTED: Sialin nan K12301
gene-evm.TU.Chr17.265 rna-evm.model.Chr17.265 Chr17 7479656 7492278 PREDICTED: Sialin GO:0016020;GO:0055085 K12301
gene-evm.TU.Chr17.266 rna-evm.model.Chr17.266 Chr17 7518728 7523172 PREDICTED: Cytochrome P450 1A1 GO:0005506;GO:0016705;GO:0020037;GO:0055114 K07408
gene-evm.TU.Chr17.267 rna-evm.model.Chr17.267 Chr17 7523347 7528938 PREDICTED: 4-hydroxybenzoate polyprenyltransferase, mitochondrial GO:0016020;GO:0016765 K06125
gene-evm.TU.Chr17.268 rna-evm.model.Chr17.268 Chr17 7569428 7571561 PREDICTED: tripartite motif-containing protein 35 nan K04082
gene-evm.TU.Chr17.269 rna-evm.model.Chr17.269 Chr17 7608971 7619786 PREDICTED: Glutamate receptor 2 GO:0004970;GO:0005216;GO:0006811;GO:0016020;GO:0038023 K05198
gene-evm.TU.Chr17.270 rna-evm.model.Chr17.270 Chr17 7642848 7643972 PREDICTED: Beta-2 adrenergic receptor GO:0004930;GO:0007186;GO:0016020 K04202
gene-evm.TU.Chr17.271 rna-evm.model.Chr17.271 Chr17 7651996 7657038 PREDICTED: exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-] nan K16476
gene-evm.TU.Chr17.273 rna-evm.model.Chr17.273 Chr17 7761279 7762307 PREDICTED: NLR family CARD domain-containing protein 3 nan nan

For more detailed data, you can explore the Download section to access the full dataset.