CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr17.250 rna-evm.model.Chr17.250 Chr17 7045609 7046961 PREDICTED: E1A/CREB-binding protein [EC:2.3.1.48] nan K10397
gene-evm.TU.Chr17.251 rna-evm.model.Chr17.251 Chr17 7047703 7059782 uncharacterized protein nan K24431
gene-evm.TU.Chr17.252 rna-evm.model.Chr17.252 Chr17 7064891 7115647 PREDICTED: Zinc transporter 2 GO:0006812;GO:0008324;GO:0016020;GO:0016787;GO:0055085 K14689
gene-evm.TU.Chr17.253 rna-evm.model.Chr17.253 Chr17 7120085 7120416 PREDICTED: Protein flp nan K01467
gene-evm.TU.Chr17.254 rna-evm.model.Chr17.254 Chr17 7122549 7136432 PREDICTED: Gigasin-6 nan K01467
gene-evm.TU.Chr17.255_evm.TU.Chr17.257 rna-evm.model.Chr17.255_evm.model.Chr17.257 Chr17 7144969 7202605 PREDICTED: 1-phosphatidylinositol 3-phosphate 5-kinase GO:0005524;GO:0016307;GO:0035556;GO:0046488;GO:0046872 K00921
gene-evm.TU.Chr17.256 rna-evm.model.Chr17.256 Chr17 7157840 7159840 PREDICTED: tripartite motif-containing protein 2/3 GO:0008270 K12026
gene-evm.TU.Chr17.257 rna-evm.model.Chr17.257.1 Chr17 7160150 7202605 PREDICTED: 1-phosphatidylinositol 3-phosphate 5-kinase GO:0005524;GO:0035556;GO:0046872 K00921
gene-evm.TU.Chr17.258 rna-evm.model.Chr17.258.2 Chr17 7209142 7281401 PREDICTED: Nuclear receptor coactivator 7 nan K25442
gene-evm.TU.Chr17.262 rna-evm.model.Chr17.262 Chr17 7409979 7411073 PREDICTED: Melanocortin receptor 5 GO:0004930;GO:0007186;GO:0016020 K04202

For more detailed data, you can explore the Download section to access the full dataset.