CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr17.238 rna-evm.model.Chr17.238 Chr17 6843935 6844228 PREDICTED: Protein GVQW3 nan K11433
gene-evm.TU.Chr17.239 rna-evm.model.Chr17.239 Chr17 6845498 6913979 PREDICTED: Metabotropic glutamate receptor 5 nan K04604
gene-evm.TU.Chr17.24 rna-evm.model.Chr17.24 Chr17 870458 874500 PREDICTED: Caltractin (Fragment) GO:0005509 K16465
gene-evm.TU.Chr17.241 rna-evm.model.Chr17.241 Chr17 6921915 6922899 PREDICTED: Multimerin-2 nan K23284
gene-evm.TU.Chr17.242 rna-evm.model.Chr17.242 Chr17 6923497 6934206 PREDICTED: G-protein coupled receptor family C group 6 member A GO:0004930;GO:0007186;GO:0016020 K04609
gene-evm.TU.Chr17.243 rna-evm.model.Chr17.243 Chr17 6939984 6943618 uncharacterized protein GO:0005515 K17551
gene-evm.TU.Chr17.244 rna-evm.model.Chr17.244 Chr17 6948503 6952094 uncharacterized protein GO:0005515 K11465
gene-evm.TU.Chr17.247 rna-evm.model.Chr17.247 Chr17 6980219 6993478 PREDICTED: Peroxisomal acyl-coenzyme A oxidase 1 GO:0003997;GO:0005777;GO:0006635 K10214
gene-evm.TU.Chr17.248 rna-evm.model.Chr17.248 Chr17 6997930 7001824 PREDICTED: Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 GO:0016020;GO:0016757 K00731
gene-evm.TU.Chr17.249 rna-evm.model.Chr17.249 Chr17 7018388 7027557 PREDICTED: Calmodulin GO:0005509 K02183

For more detailed data, you can explore the Download section to access the full dataset.