CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr17.229 rna-evm.model.Chr17.229 Chr17 6507512 6527855 PREDICTED: Proteasomal ubiquitin receptor ADRM1-B GO:0005634;GO:0005737 K06691
gene-evm.TU.Chr17.23 rna-evm.model.Chr17.23 Chr17 861966 866768 PREDICTED: EF-hand domain-containing protein 1 GO:0016020 K24190
gene-evm.TU.Chr17.230 rna-evm.model.Chr17.230 Chr17 6528623 6556424 PREDICTED: Innexin unc-9 nan K22037
gene-evm.TU.Chr17.231 rna-evm.model.Chr17.231 Chr17 6564647 6604315 PREDICTED: Glutamate--cysteine ligase catalytic subunit GO:0004357;GO:0006750 K11204
gene-evm.TU.Chr17.232 rna-evm.model.Chr17.232 Chr17 6608197 6659061 PREDICTED: Vacuolar protein 8 GO:0005515 K08332
gene-evm.TU.Chr17.233 rna-evm.model.Chr17.233 Chr17 6667734 6674289 PREDICTED: F-box only protein 16 GO:0005515 K10299
gene-evm.TU.Chr17.234 rna-evm.model.Chr17.234 Chr17 6678536 6698232 PREDICTED: Double-stranded RNA-binding protein Staufen homolog nan K17597
gene-evm.TU.Chr17.235 rna-evm.model.Chr17.235 Chr17 6718812 6725906 PREDICTED: Innexin unc-9 nan K22037
gene-evm.TU.Chr17.236 rna-evm.model.Chr17.236 Chr17 6730616 6736277 PREDICTED: Beta-1,2-xylosyltransferase RCN11 GO:0016757 K03714
gene-evm.TU.Chr17.237 rna-evm.model.Chr17.237 Chr17 6759200 6834675 PREDICTED: Solute carrier organic anion transporter family member 5A1 GO:0005215;GO:0005515;GO:0016020;GO:0055085 K14353

For more detailed data, you can explore the Download section to access the full dataset.