CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr17.216 rna-evm.model.Chr17.216 Chr17 6184172 6187807 uncharacterized protein nan K17592
gene-evm.TU.Chr17.218 rna-evm.model.Chr17.218 Chr17 6262774 6263946 PREDICTED: D(2)-like dopamine receptor GO:0004930;GO:0007186;GO:0016020 K04202
gene-evm.TU.Chr17.219 rna-evm.model.Chr17.219 Chr17 6267047 6268090 PREDICTED: Beta-2 adrenergic receptor GO:0004930;GO:0007186;GO:0016020 K04202
gene-evm.TU.Chr17.22 rna-evm.model.Chr17.22 Chr17 850837 856673 PREDICTED: Monocarboxylate transporter 12 GO:0016020;GO:0055085 K08185
gene-evm.TU.Chr17.221 rna-evm.model.Chr17.221 Chr17 6303956 6307944 PREDICTED: Perlucin-like protein nan K06721
gene-evm.TU.Chr17.222 rna-evm.model.Chr17.222 Chr17 6331794 6375606 PREDICTED: Amiloride-sensitive sodium channel subunit gamma GO:0005272;GO:0006814;GO:0016020 K04824
gene-evm.TU.Chr17.223 rna-evm.model.Chr17.223 Chr17 6380404 6389150 PREDICTED: IgGFc-binding protein GO:0005044;GO:0016020 K06558
gene-evm.TU.Chr17.224 rna-evm.model.Chr17.224 Chr17 6395303 6399448 PREDICTED: Senecionine N-oxygenase GO:0004499;GO:0050660;GO:0050661;GO:0055114 K18277
gene-evm.TU.Chr17.226 rna-evm.model.Chr17.226 Chr17 6433557 6441480 PREDICTED: IgGFc-binding protein GO:0005044;GO:0016020 K06558
gene-evm.TU.Chr17.228 rna-evm.model.Chr17.228 Chr17 6483177 6504215 PREDICTED: Phospholipase ABHD3 nan K13696

For more detailed data, you can explore the Download section to access the full dataset.