CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr17.204 rna-evm.model.Chr17.204 Chr17 5858922 5870341 PREDICTED: SUMO-specific isopeptidase USPL1 GO:0030576;GO:0032183;GO:0016929 K23008
gene-evm.TU.Chr17.205 rna-evm.model.Chr17.205 Chr17 5901334 5907162 PREDICTED: Zinc finger and BTB domain-containing protein 20 GO:0003676 K09191
gene-evm.TU.Chr17.206 rna-evm.model.Chr17.206 Chr17 5920822 5924470 PREDICTED: Hairy/enhancer-of-split related with YRPW motif protein 1 GO:0003677;GO:0006355;GO:0046983 K09091
gene-evm.TU.Chr17.207 rna-evm.model.Chr17.207 Chr17 5978543 6020101 PREDICTED: Cullin-associated NEDD8-dissociated protein 1 GO:0010265 K24172
gene-evm.TU.Chr17.208 rna-evm.model.Chr17.208 Chr17 6027225 6032821 PREDICTED: Toll-like receptor 7 GO:0005515 K05401
gene-evm.TU.Chr17.209 rna-evm.model.Chr17.209 Chr17 6035108 6044179 PREDICTED: Adenosine deaminase GO:0019239 K01488
gene-evm.TU.Chr17.21 rna-evm.model.Chr17.21 Chr17 829454 850554 PREDICTED: Pseudouridine-5'-phosphate glycosidase GO:0016798 K16330
gene-evm.TU.Chr17.210_evm.TU.Chr17.211 rna-evm.model.Chr17.210_evm.model.Chr17.211 Chr17 6047097 6078276 PREDICTED: Elongation factor 1-alpha GO:0003924;GO:0005525 K03231
gene-evm.TU.Chr17.213 rna-evm.model.Chr17.213 Chr17 6121808 6149631 PREDICTED: Nuclear receptor subfamily 1 group D member 2 GO:0003677;GO:0003707;GO:0005634;GO:0006355 K03728
gene-evm.TU.Chr17.214 rna-evm.model.Chr17.214 Chr17 6151117 6155829 uncharacterized protein nan nan

For more detailed data, you can explore the Download section to access the full dataset.