CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr17.194 rna-evm.model.Chr17.194 Chr17 5599236 5721362 PREDICTED: Versican core protein GO:0005509 K23949
gene-evm.TU.Chr17.197 rna-evm.model.Chr17.197 Chr17 5728686 5744362 PREDICTED: Sterile alpha motif domain-containing protein 9-like nan K23949
gene-evm.TU.Chr17.198 rna-evm.model.Chr17.198 Chr17 5760061 5799791 PREDICTED: Lysine-specific histone demethylase 1B GO:0005515;GO:0008270;GO:0016491;GO:0055114 K19413
gene-evm.TU.Chr17.199 rna-evm.model.Chr17.199 Chr17 5806674 5821237 PREDICTED: Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A GO:0004576;GO:0006486;GO:0016020 K07151
gene-evm.TU.Chr17.2 rna-evm.model.Chr17.2 Chr17 47819 74913 PREDICTED: ATP synthase subunit C lysine N-methyltransferase GO:0016279 nan
gene-evm.TU.Chr17.20 rna-evm.model.Chr17.20.2 Chr17 748822 779873 PREDICTED: Sal-like protein 1 GO:0003676 K09214
gene-evm.TU.Chr17.200 rna-evm.model.Chr17.200 Chr17 5825552 5827137 uncharacterized protein nan nan
gene-evm.TU.Chr17.201 rna-evm.model.Chr17.201 Chr17 5832367 5834819 uncharacterized protein nan K05162
gene-evm.TU.Chr17.202 rna-evm.model.Chr17.202 Chr17 5843099 5846388 PREDICTED: Lens fiber major intrinsic protein GO:0015267;GO:0016020;GO:0055085 K09867
gene-evm.TU.Chr17.203 rna-evm.model.Chr17.203 Chr17 5851553 5854721 PREDICTED: RBPJ-interacting and tubulin-associated protein 1 GO:0007219;GO:0015631;GO:0051168 K25551

For more detailed data, you can explore the Download section to access the full dataset.