CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr17.183 rna-evm.model.Chr17.183 Chr17 5387283 5388786 PREDICTED: Orexin receptor type 2 GO:0004930;GO:0007186;GO:0016020 K04238
gene-evm.TU.Chr17.184 rna-evm.model.Chr17.184 Chr17 5403330 5408783 PREDICTED: Orexin receptor type 2 GO:0004930;GO:0007186;GO:0016020 K08421
gene-evm.TU.Chr17.185 rna-evm.model.Chr17.185 Chr17 5422360 5422884 PREDICTED: Mu-type opioid receptor GO:0004930;GO:0007186;GO:0016020 K04238
gene-evm.TU.Chr17.186 rna-evm.model.Chr17.186 Chr17 5429964 5433113 uncharacterized protein nan K04357
gene-evm.TU.Chr17.188 rna-evm.model.Chr17.188 Chr17 5448771 5458756 uncharacterized protein nan K15197
gene-evm.TU.Chr17.189 rna-evm.model.Chr17.189 Chr17 5474715 5484849 PREDICTED: C-type lectin domain family 17, member A nan K17513
gene-evm.TU.Chr17.190 rna-evm.model.Chr17.190 Chr17 5493808 5507732 PREDICTED: C-type lectin domain family 17, member A nan K17513
gene-evm.TU.Chr17.191 rna-evm.model.Chr17.191 Chr17 5528581 5541982 PREDICTED: CD209 antigen-like protein E nan K06563
gene-evm.TU.Chr17.192 rna-evm.model.Chr17.192 Chr17 5570771 5573595 PREDICTED: Aggrecan core protein nan K17519
gene-evm.TU.Chr17.193 rna-evm.model.Chr17.193 Chr17 5579239 5583537 PREDICTED: Macrophage mannose receptor 1 nan K06563

For more detailed data, you can explore the Download section to access the full dataset.