CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr17.177 rna-evm.model.Chr17.177 Chr17 5298999 5299619 PREDICTED: solute carrier family 23 (nucleobase transporter), member 1/2 nan nan
gene-evm.TU.Chr17.1770 rna-evm.model.Chr17.1770 Chr17 49782297 49782966 uncharacterized protein nan K10417
gene-evm.TU.Chr17.1771 rna-evm.model.Chr17.1771 Chr17 49783541 49784857 PREDICTED: Uncharacterized protein F54H12.2 GO:0055114 nan
gene-evm.TU.Chr17.1772 rna-evm.model.Chr17.1772 Chr17 49785741 49786133 PREDICTED: NACHT, LRR and PYD domains-containing protein 3 nan K11587
gene-evm.TU.Chr17.1779 rna-evm.model.Chr17.1779 Chr17 50161975 50168571 uncharacterized protein nan nan
gene-evm.TU.Chr17.179 rna-evm.model.Chr17.179 Chr17 5315575 5321018 PREDICTED: Orexin receptor type 2 GO:0004930;GO:0007186;GO:0016020 K08421
gene-evm.TU.Chr17.18 rna-evm.model.Chr17.18 Chr17 708522 710131 PREDICTED: lysine-specific demethylase 9 [EC:1.14.11.-] nan K04149
gene-evm.TU.Chr17.180 rna-evm.model.Chr17.180 Chr17 5341688 5344150 PREDICTED: Mu-type opioid receptor GO:0004930;GO:0007186;GO:0016020 K04238
gene-evm.TU.Chr17.181 rna-evm.model.Chr17.181 Chr17 5349447 5352998 uncharacterized protein nan K04357
gene-evm.TU.Chr17.182 rna-evm.model.Chr17.182 Chr17 5371622 5381734 uncharacterized protein nan nan

For more detailed data, you can explore the Download section to access the full dataset.