CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr17.1756 rna-evm.model.Chr17.1756 Chr17 49039747 49041519 PREDICTED: solute carrier family 15, member 5 nan K14063
gene-evm.TU.Chr17.1757 rna-evm.model.Chr17.1757 Chr17 49047798 49074249 PREDICTED: C3 and PZP-like alpha-2-macroglobulin domain-containing protein 8 GO:0004842;GO:0005515;GO:0005576;GO:0005615 K06530
gene-evm.TU.Chr17.1758 rna-evm.model.Chr17.1758 Chr17 49074284 49095905 PREDICTED: CD109 antigen GO:0004866 K06530
gene-evm.TU.Chr17.1759 rna-evm.model.Chr17.1759 Chr17 49136820 49137173 PREDICTED: ryanodine receptor 1 nan K21037
gene-evm.TU.Chr17.1760 rna-evm.model.Chr17.1760 Chr17 49145161 49184738 PREDICTED: Serine/threonine-protein kinase PAK 2 nan K04409
gene-evm.TU.Chr17.1763 rna-evm.model.Chr17.1763 Chr17 49371555 49389291 PREDICTED: solute carrier family 7 (cationic amino acid transporter), member 4 nan K13865
gene-evm.TU.Chr17.1764 rna-evm.model.Chr17.1764 Chr17 49404554 49405027 PREDICTED: trichohyalin nan K14325
gene-evm.TU.Chr17.1765 rna-evm.model.Chr17.1765 Chr17 49478379 49479161 uncharacterized protein nan K26274
gene-evm.TU.Chr17.1766 rna-evm.model.Chr17.1766 Chr17 49479175 49480395 PREDICTED: acidic leucine-rich nuclear phosphoprotein 32 family member A/C/D GO:0003676 K07494
gene-evm.TU.Chr17.1768 rna-evm.model.Chr17.1768 Chr17 49578384 49583670 PREDICTED: Cationic amino acid transporter 4 nan K13866

For more detailed data, you can explore the Download section to access the full dataset.