CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr17.1745 rna-evm.model.Chr17.1745 Chr17 48797734 48806934 PREDICTED: Zinc finger protein 346 GO:0003676;GO:0008270 K13203
gene-evm.TU.Chr17.1746 rna-evm.model.Chr17.1746 Chr17 48815495 48816079 PREDICTED: Transforming protein RhoA GO:0003924;GO:0005525;GO:0007264 K04513
gene-evm.TU.Chr17.1747 rna-evm.model.Chr17.1747 Chr17 48840830 48841039 PREDICTED: Transforming protein RhoA GO:0003924;GO:0005525 K04513
gene-evm.TU.Chr17.1748 rna-evm.model.Chr17.1748 Chr17 48842702 48843305 uncharacterized protein nan nan
gene-evm.TU.Chr17.1749 rna-evm.model.Chr17.1749 Chr17 48852632 48864952 PREDICTED: Nicotinate phosphoribosyltransferase nan K00763
gene-evm.TU.Chr17.1750 rna-evm.model.Chr17.1750 Chr17 48891528 48918147 PREDICTED: V-type proton ATPase subunit H GO:0000221;GO:1902600;GO:0046961 K02144
gene-evm.TU.Chr17.1751 rna-evm.model.Chr17.1751 Chr17 48944631 48949067 PREDICTED: protein kinase D [EC:2.7.11.13] nan K04949
gene-evm.TU.Chr17.1752 rna-evm.model.Chr17.1752 Chr17 48978201 48982055 PREDICTED: zinc finger protein 862-like nan K24642
gene-evm.TU.Chr17.1754 rna-evm.model.Chr17.1754 Chr17 49024650 49035936 PREDICTED: Sushi repeat-containing protein SRPX2 GO:0005509 K24469
gene-evm.TU.Chr17.1755 rna-evm.model.Chr17.1755 Chr17 49037422 49038946 PREDICTED: solute carrier family 15, member 5 nan nan

For more detailed data, you can explore the Download section to access the full dataset.