CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr17.1736 rna-evm.model.Chr17.1736 Chr17 48631213 48631482 uncharacterized protein nan K24190
gene-evm.TU.Chr17.1737 rna-evm.model.Chr17.1737 Chr17 48634581 48641295 uncharacterized protein nan K24190
gene-evm.TU.Chr17.1738 rna-evm.model.Chr17.1738 Chr17 48641416 48642649 uncharacterized protein nan nan
gene-evm.TU.Chr17.1739 rna-evm.model.Chr17.1739 Chr17 48643067 48643666 uncharacterized protein nan K09168
gene-evm.TU.Chr17.174 rna-evm.model.Chr17.174 Chr17 5264285 5271892 PREDICTED: peripheral myelin protein 22 GO:0016020 K24190
gene-evm.TU.Chr17.1740 rna-evm.model.Chr17.1740 Chr17 48643713 48645179 PREDICTED: NF-X1-type zinc finger protein NFXL2-like nan K09168
gene-evm.TU.Chr17.1741 rna-evm.model.Chr17.1741 Chr17 48682673 48687857 PREDICTED: 60S acidic ribosomal protein P1 nan K02942
gene-evm.TU.Chr17.1742 rna-evm.model.Chr17.1742 Chr17 48689496 48719777 PREDICTED: Thioredoxin domain-containing protein 5 GO:0045454 K13984
gene-evm.TU.Chr17.1743 rna-evm.model.Chr17.1743 Chr17 48724478 48730696 PREDICTED: 60S ribosomal protein L30 GO:0003723;GO:0003735;GO:0022625 K02908
gene-evm.TU.Chr17.1744 rna-evm.model.Chr17.1744 Chr17 48738297 48762440 PREDICTED: PAS domain-containing serine/threonine-protein kinase GO:0004672;GO:0005524;GO:0006468 K08801

For more detailed data, you can explore the Download section to access the full dataset.