CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.2700 rna-evm.model.Chr1.2700 Chr1 84587750 84607531 PREDICTED: Cyclic nucleotide-binding domain-containing protein 2 nan K19477
gene-evm.TU.Chr1.2702 rna-evm.model.Chr1.2702 Chr1 84614314 84616345 PREDICTED: E3 ubiquitin-protein ligase TRIM33 nan K12026
gene-evm.TU.Chr1.2703 rna-evm.model.Chr1.2703 Chr1 84622776 84624659 PREDICTED: tripartite motif-containing protein 2/3 nan K12026
gene-evm.TU.Chr1.2704 rna-evm.model.Chr1.2704 Chr1 84632915 84656686 PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 GO:0003676;GO:0005524;GO:0005634;GO:0006338;GO:0016589;GO:0016818;GO:0016887;GO:0031491;GO:0006338 K11727
gene-evm.TU.Chr1.2706 rna-evm.model.Chr1.2706 Chr1 84679738 84772239 PREDICTED: E3 ubiquitin-protein ligase TRIM33 GO:0005515;GO:0005525;GO:0008270 K08883
gene-evm.TU.Chr1.2707 rna-evm.model.Chr1.2707 Chr1 84772250 84772732 uncharacterized protein nan K20799
gene-evm.TU.Chr1.2709 rna-evm.model.Chr1.2709 Chr1 84827165 84828659 PREDICTED: NACHT, LRR and PYD domains-containing protein 3 nan K06949
gene-evm.TU.Chr1.271 rna-evm.model.Chr1.271 Chr1 8219637 8273076 PREDICTED: Inverted formin-2 GO:0003779;GO:0016043;GO:0031267;GO:0030036 K23958
gene-evm.TU.Chr1.2710 rna-evm.model.Chr1.2710 Chr1 84828699 84829778 uncharacterized protein nan K00172
gene-evm.TU.Chr1.2711 rna-evm.model.Chr1.2711 Chr1 84839870 84856817 PREDICTED: NF-X1-type zinc finger protein NFXL1 GO:0003700;GO:0005634;GO:0006355;GO:0008270 K15683

For more detailed data, you can explore the Download section to access the full dataset.