CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.2635 rna-evm.model.Chr1.2635 Chr1 82372444 82372956 PREDICTED: protocadherin-15 GO:0046872 K23038
gene-evm.TU.Chr1.2636 rna-evm.model.Chr1.2636 Chr1 82374682 82375383 PREDICTED: vomeronasal 2 receptor GO:0003677;GO:0006310;GO:0015074 K04763
gene-evm.TU.Chr1.2637 rna-evm.model.Chr1.2637 Chr1 82387942 82390124 uncharacterized protein nan nan
gene-evm.TU.Chr1.2638 rna-evm.model.Chr1.2638 Chr1 82543051 82554981 PREDICTED: Cytoskeleton-associated protein 2 nan K16769
gene-evm.TU.Chr1.2640 rna-evm.model.Chr1.2640 Chr1 82585601 82594206 PREDICTED: MIT domain-containing protein 1 nan K17927
gene-evm.TU.Chr1.2641 rna-evm.model.Chr1.2641 Chr1 82594304 82600797 PREDICTED: Spermatogenesis-associated protein 4 nan K25616
gene-evm.TU.Chr1.2642 rna-evm.model.Chr1.2642 Chr1 82607969 82608817 PREDICTED: exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-] nan K16599
gene-evm.TU.Chr1.2643 rna-evm.model.Chr1.2643 Chr1 82621127 82621471 PREDICTED: histone-lysine N-methyltransferase SETMAR [EC:2.1.1.43] nan nan
gene-evm.TU.Chr1.2644 rna-evm.model.Chr1.2644 Chr1 82627445 82636169 PREDICTED: 60 kDa SS-A/Ro ribonucleoprotein GO:0003723 K11089
gene-evm.TU.Chr1.2645 rna-evm.model.Chr1.2645 Chr1 82640021 82687760 PREDICTED: Transient receptor potential cation channel subfamily A member 1 homolog GO:0005216;GO:0005515;GO:0006811;GO:0016020;GO:0055085 K04984

For more detailed data, you can explore the Download section to access the full dataset.