CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.2670 rna-evm.model.Chr1.2670 Chr1 83282671 83300983 PREDICTED: Protein inturned GO:0001736;GO:0060271 K22862
gene-evm.TU.Chr1.2671 rna-evm.model.Chr1.2671 Chr1 83309450 83325830 uncharacterized protein nan K14650
gene-evm.TU.Chr1.2673 rna-evm.model.Chr1.2673 Chr1 83382735 83388636 PREDICTED: Proton-coupled amino acid transporter 4 nan K14209
gene-evm.TU.Chr1.2674 rna-evm.model.Chr1.2674 Chr1 83389511 83395027 PREDICTED: Proton-coupled amino acid transporter 4 nan K14209
gene-evm.TU.Chr1.2675 rna-evm.model.Chr1.2675 Chr1 83401978 83419784 PREDICTED: Proton-coupled amino acid transporter 1 nan K14209
gene-evm.TU.Chr1.2676 rna-evm.model.Chr1.2676 Chr1 83424520 83444415 PREDICTED: E3 ubiquitin-protein ligase SH3RF3 GO:0005515;GO:0006915;GO:0046328 K12171
gene-evm.TU.Chr1.2679 rna-evm.model.Chr1.2679 Chr1 83476969 83485564 PREDICTED: Laccase-5 GO:0005507;GO:0016491;GO:0055114 K00423
gene-evm.TU.Chr1.2680 rna-evm.model.Chr1.2680 Chr1 83486434 83491780 PREDICTED: Proton-coupled amino acid transporter 1 nan K14209
gene-evm.TU.Chr1.2682 rna-evm.model.Chr1.2682 Chr1 83497456 83514800 PREDICTED: Alpha-galactosidase A GO:0004553;GO:0005975 K01204
gene-evm.TU.Chr1.2683 rna-evm.model.Chr1.2683 Chr1 83553903 83566991 PREDICTED: Cyclic nucleotide-binding domain-containing protein 2 nan K19477

For more detailed data, you can explore the Download section to access the full dataset.