CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.2712 rna-evm.model.Chr1.2712 Chr1 84869796 84887962 PREDICTED: Ubiquitin-protein ligase E3A GO:0004842 K10587
gene-evm.TU.Chr1.2713 rna-evm.model.Chr1.2713 Chr1 84898792 84913976 PREDICTED: Nuclear pore complex protein Nup54 GO:0005643 K14308
gene-evm.TU.Chr1.2714 rna-evm.model.Chr1.2714 Chr1 84917072 84921170 PREDICTED: E3 ubiquitin-protein ligase TRIM56 GO:0008270 K12026
gene-evm.TU.Chr1.2715 rna-evm.model.Chr1.2715 Chr1 84933360 84949744 PREDICTED: Cysteine-rich hydrophobic domain-containing protein 1 nan K11499
gene-evm.TU.Chr1.2716 rna-evm.model.Chr1.2716 Chr1 84949786 84952958 uncharacterized protein nan K10080
gene-evm.TU.Chr1.2717 rna-evm.model.Chr1.2717 Chr1 84960649 84967478 uncharacterized protein nan K01837
gene-evm.TU.Chr1.272 rna-evm.model.Chr1.272 Chr1 8385739 8390706 PREDICTED: Ras-related protein RABF1 GO:0003924;GO:0005525 K07888
gene-evm.TU.Chr1.2723 rna-evm.model.Chr1.2723 Chr1 85167953 85227829 PREDICTED: myosin heavy chain nan nan
gene-evm.TU.Chr1.2724 rna-evm.model.Chr1.2724 Chr1 85247701 85275623 PREDICTED: myosin heavy chain nan K07164
gene-evm.TU.Chr1.2725 rna-evm.model.Chr1.2725 Chr1 85302403 85314381 PREDICTED: myosin heavy chain nan K06675

For more detailed data, you can explore the Download section to access the full dataset.