CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.274 rna-evm.model.Chr1.274 Chr1 8402990 8428743 PREDICTED: Neuronal membrane glycoprotein M6-a GO:0016020 K17271
gene-evm.TU.Chr1.2741 rna-evm.model.Chr1.2741 Chr1 85718814 85727053 PREDICTED: Leucine-rich repeat-containing protein 74A GO:0005509;GO:0005515 K22615
gene-evm.TU.Chr1.2744 rna-evm.model.Chr1.2744 Chr1 85798874 85803575 uncharacterized protein nan K22534
gene-evm.TU.Chr1.2745 rna-evm.model.Chr1.2745 Chr1 85818328 85826542 PREDICTED: DNA excision repair protein ERCC-6 nan K16091
gene-evm.TU.Chr1.2746 rna-evm.model.Chr1.2746 Chr1 85830008 85831409 uncharacterized protein nan nan
gene-evm.TU.Chr1.2747 rna-evm.model.Chr1.2747 Chr1 85833506 85846277 PREDICTED: Receptor-type tyrosine-protein phosphatase epsilon GO:0004725;GO:0006470;GO:0016311;GO:0016791 K06776
gene-evm.TU.Chr1.2749 rna-evm.model.Chr1.2749 Chr1 85887388 85891660 PREDICTED: Scavenger receptor class F member 1 nan K13297
gene-evm.TU.Chr1.275 rna-evm.model.Chr1.275.1 Chr1 8457332 8494745 PREDICTED: Sodium- and chloride-dependent glycine transporter 2 GO:0016020 K05038
gene-evm.TU.Chr1.2750 rna-evm.model.Chr1.2750 Chr1 85931144 85937850 PREDICTED: receptor-type tyrosine-protein phosphatase kappa [EC:3.1.3.48] nan K18033
gene-evm.TU.Chr1.2751 rna-evm.model.Chr1.2751 Chr1 85945456 85954617 PREDICTED: Multiple epidermal growth factor-like domains protein 11 nan K24068

For more detailed data, you can explore the Download section to access the full dataset.