CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.2646_evm.TU.Chr1.2647 rna-evm.model.Chr1.2646_evm.model.Chr1.2647 Chr1 82700627 82727195 PREDICTED: NEDD4-binding protein 2-like 1 nan K15720
gene-evm.TU.Chr1.2648 rna-evm.model.Chr1.2648 Chr1 82738225 82742859 PREDICTED: Zinc finger protein 555 GO:0003676 K09228
gene-evm.TU.Chr1.265 rna-evm.model.Chr1.265 Chr1 7659943 7660319 uncharacterized protein nan nan
gene-evm.TU.Chr1.2651 rna-evm.model.Chr1.2651 Chr1 82799090 82800803 PREDICTED: papilin GO:0030414 K25685
gene-evm.TU.Chr1.2652 rna-evm.model.Chr1.2652 Chr1 82805908 82826231 uncharacterized protein nan nan
gene-evm.TU.Chr1.2653 rna-evm.model.Chr1.2653 Chr1 82837641 82867392 PREDICTED: Exocyst complex component 1 GO:0000145;GO:0006887 K19983
gene-evm.TU.Chr1.2654 rna-evm.model.Chr1.2654 Chr1 82874740 82896293 PREDICTED: Zinc finger protein Gfi-1 GO:0003676 K09223
gene-evm.TU.Chr1.2655 rna-evm.model.Chr1.2655 Chr1 82940748 82941263 PREDICTED: Cell surface glycoprotein 1 nan K19211
gene-evm.TU.Chr1.2656 rna-evm.model.Chr1.2656 Chr1 82954333 82955938 uncharacterized protein GO:0004930;GO:0007186;GO:0016020 K08375
gene-evm.TU.Chr1.2657 rna-evm.model.Chr1.2657 Chr1 82957393 82964939 PREDICTED: Polyprenol reductase GO:0003865;GO:0006488;GO:0006629;GO:0016627 K12345

For more detailed data, you can explore the Download section to access the full dataset.