CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.2726 rna-evm.model.Chr1.2726 Chr1 85339008 85361002 PREDICTED: myosin heavy chain nan K06675
gene-evm.TU.Chr1.2727 rna-evm.model.Chr1.2727 Chr1 85363520 85373551 uncharacterized protein nan K19018
gene-evm.TU.Chr1.273 rna-evm.model.Chr1.273 Chr1 8397920 8399008 PREDICTED: Centromere protein K GO:0005634;GO:0051382 K11503
gene-evm.TU.Chr1.2731 rna-evm.model.Chr1.2731 Chr1 85429861 85478620 PREDICTED: Bone morphogenetic protein 1 nan K19018
gene-evm.TU.Chr1.2733 rna-evm.model.Chr1.2733 Chr1 85489971 85490807 PREDICTED: CD109 antigen nan K06558
gene-evm.TU.Chr1.2735 rna-evm.model.Chr1.2735 Chr1 85515576 85524200 PREDICTED: Testis-expressed protein 26 nan K05745
gene-evm.TU.Chr1.2736 rna-evm.model.Chr1.2736 Chr1 85652191 85693060 PREDICTED: Rho GTPase-activating protein 6 GO:0007165 K20631
gene-evm.TU.Chr1.2737 rna-evm.model.Chr1.2737 Chr1 85695709 85697364 PREDICTED: myosin I nan K04762
gene-evm.TU.Chr1.2738 rna-evm.model.Chr1.2738 Chr1 85702492 85708025 PREDICTED: Toll-like receptor 1 GO:0005515;GO:0007165 K10169
gene-evm.TU.Chr1.2739 rna-evm.model.Chr1.2739 Chr1 85708113 85715296 PREDICTED: Proprotein convertase subtilisin/kexin type 5 nan K08654

For more detailed data, you can explore the Download section to access the full dataset.