CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.2752 rna-evm.model.Chr1.2752 Chr1 85955532 86048328 PREDICTED: Multiple epidermal growth factor-like domains protein 11 nan K13297
gene-evm.TU.Chr1.2754 rna-evm.model.Chr1.2754 Chr1 86096720 86097601 PREDICTED: reverse transcriptase family protein, partial nan nan
gene-evm.TU.Chr1.2755 rna-evm.model.Chr1.2755 Chr1 86098775 86099164 uncharacterized protein nan K16665
gene-evm.TU.Chr1.2759 rna-evm.model.Chr1.2759 Chr1 86162201 86203286 PREDICTED: Receptor-type tyrosine-protein phosphatase epsilon GO:0004725;GO:0006470;GO:0016311;GO:0016791 K18033
gene-evm.TU.Chr1.276 rna-evm.model.Chr1.276 Chr1 8504139 8508992 PREDICTED: Zinc finger CCHC domain-containing protein 10 nan K14325
gene-evm.TU.Chr1.2764 rna-evm.model.Chr1.2764 Chr1 86400140 86432302 PREDICTED: Receptor-type tyrosine-protein phosphatase T GO:0004725;GO:0006470;GO:0016311;GO:0016791 K13297
gene-evm.TU.Chr1.2768 rna-evm.model.Chr1.2768 Chr1 86584185 86687256 PREDICTED: Multiple epidermal growth factor-like domains protein 6 nan K24068
gene-evm.TU.Chr1.2769 rna-evm.model.Chr1.2769 Chr1 86701664 86703634 uncharacterized protein nan nan
gene-evm.TU.Chr1.277 rna-evm.model.Chr1.277 Chr1 8511845 8550133 PREDICTED: Probable cysteine--tRNA ligase, mitochondrial GO:0000166;GO:0004817;GO:0004888;GO:0005216;GO:0005230;GO:0005524;GO:0005737;GO:0006423;GO:0006811;GO:0016020;GO:0034220 K01883
gene-evm.TU.Chr1.2770 rna-evm.model.Chr1.2770 Chr1 86704510 86709684 PREDICTED: receptor-type tyrosine-protein phosphatase kappa [EC:3.1.3.48] nan K17253

For more detailed data, you can explore the Download section to access the full dataset.