CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.2658 rna-evm.model.Chr1.2658 Chr1 82964601 82988785 PREDICTED: Tumor suppressor candidate 3 nan K19478
gene-evm.TU.Chr1.266 rna-evm.model.Chr1.266 Chr1 7788679 7868876 PREDICTED: Glycine receptor subunit alpha-3 GO:0004888;GO:0005216;GO:0005230;GO:0006811;GO:0016020;GO:0034220 K05194
gene-evm.TU.Chr1.2660 rna-evm.model.Chr1.2660 Chr1 82993290 83064701 PREDICTED: Zeta-sarcoglycan GO:0016012;GO:0016020 K12563
gene-evm.TU.Chr1.2661 rna-evm.model.Chr1.2661 Chr1 83064944 83077432 PREDICTED: BTB/POZ domain-containing protein 17 GO:0005515 K24808
gene-evm.TU.Chr1.2664 rna-evm.model.Chr1.2664 Chr1 83154995 83156239 PREDICTED: Gastrin/cholecystokinin type B receptor GO:0004930;GO:0007186;GO:0016020 K04194
gene-evm.TU.Chr1.2665 rna-evm.model.Chr1.2665 Chr1 83157505 83170584 PREDICTED: Metalloproteinase inhibitor 2 GO:0005515;GO:0008191 K16866
gene-evm.TU.Chr1.2666 rna-evm.model.Chr1.2666 Chr1 83196777 83230673 PREDICTED: Apoptosis-inducing factor 1, mitochondrial GO:0016491;GO:0046983;GO:0055114 K04727
gene-evm.TU.Chr1.2667 rna-evm.model.Chr1.2667 Chr1 83237709 83254817 PREDICTED: CD109 antigen GO:0004866 K06530
gene-evm.TU.Chr1.2668 rna-evm.model.Chr1.2668 Chr1 83255240 83268121 PREDICTED: CD109 antigen GO:0004866;GO:0005576;GO:0005615 K06530
gene-evm.TU.Chr1.267 rna-evm.model.Chr1.267 Chr1 7936675 7945694 PREDICTED: Heat shock 70 kDa protein 12B nan K04043

For more detailed data, you can explore the Download section to access the full dataset.