CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr17.1720 rna-evm.model.Chr17.1720 Chr17 47940873 47994453 PREDICTED: Zinc finger protein 346 GO:0003676;GO:0008270 K13203
gene-evm.TU.Chr17.1721 rna-evm.model.Chr17.1721 Chr17 48047933 48066956 PREDICTED: V-type proton ATPase subunit H GO:0000221;GO:1902600;GO:0046961 K02144
gene-evm.TU.Chr17.1722 rna-evm.model.Chr17.1722 Chr17 48067134 48067950 PREDICTED: Integrase/recombinase xerD homolog nan K04763
gene-evm.TU.Chr17.1723 rna-evm.model.Chr17.1723 Chr17 48070226 48070960 PREDICTED: organic solute transporter subunit alpha GO:0003676;GO:0008270 K17578
gene-evm.TU.Chr17.1725 rna-evm.model.Chr17.1725 Chr17 48195253 48200108 uncharacterized protein nan K08332
gene-evm.TU.Chr17.1726 rna-evm.model.Chr17.1726 Chr17 48211894 48213016 PREDICTED: Transposable element Tc1 transposase GO:0003677;GO:0006313;GO:0015074 K07494
gene-evm.TU.Chr17.1727 rna-evm.model.Chr17.1727 Chr17 48229150 48258519 PREDICTED: male-specific lethal 1 GO:0005515;GO:0007165 K08332
gene-evm.TU.Chr17.173 rna-evm.model.Chr17.173 Chr17 5244536 5251361 uncharacterized protein nan K05235
gene-evm.TU.Chr17.1731 rna-evm.model.Chr17.1731 Chr17 48479883 48483714 uncharacterized protein nan nan
gene-evm.TU.Chr17.1732 rna-evm.model.Chr17.1732 Chr17 48500155 48503988 PREDICTED: Zinc finger and BTB domain-containing protein 17 GO:0003676 K09230

For more detailed data, you can explore the Download section to access the full dataset.