CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr17.1708 rna-evm.model.Chr17.1708 Chr17 47677699 47678892 PREDICTED: protein kinase D [EC:2.7.11.13] nan K11499
gene-evm.TU.Chr17.1709 rna-evm.model.Chr17.1709 Chr17 47743641 47749120 PREDICTED: Protein REDUCED WALL ACETYLATION 4 nan K03377
gene-evm.TU.Chr17.171 rna-evm.model.Chr17.171 Chr17 5235290 5236300 PREDICTED: Neuronal acetylcholine receptor subunit beta-3 GO:0004888;GO:0005216;GO:0005230;GO:0006811;GO:0016020;GO:0034220 K04814
gene-evm.TU.Chr17.1711 rna-evm.model.Chr17.1711 Chr17 47772030 47775288 uncharacterized protein nan K24190
gene-evm.TU.Chr17.1712 rna-evm.model.Chr17.1712 Chr17 47779580 47786273 uncharacterized protein nan K24190
gene-evm.TU.Chr17.1715 rna-evm.model.Chr17.1715 Chr17 47788934 47790256 PREDICTED: NF-X1-type zinc finger protein NFXL2-like nan K09168
gene-evm.TU.Chr17.1716 rna-evm.model.Chr17.1716 Chr17 47821252 47827547 PREDICTED: 60S acidic ribosomal protein P1 nan K02942
gene-evm.TU.Chr17.1717 rna-evm.model.Chr17.1717 Chr17 47829214 47854611 PREDICTED: Thioredoxin domain-containing protein 5 GO:0045454 K13984
gene-evm.TU.Chr17.1718 rna-evm.model.Chr17.1718 Chr17 47862348 47871207 PREDICTED: 60S ribosomal protein L30 GO:0003723;GO:0003735;GO:0022625 K02908
gene-evm.TU.Chr17.1719 rna-evm.model.Chr17.1719 Chr17 47881773 47926766 PREDICTED: PAS domain-containing serine/threonine-protein kinase GO:0004672;GO:0005524;GO:0006468 K08801

For more detailed data, you can explore the Download section to access the full dataset.