CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr17.1696 rna-evm.model.Chr17.1696 Chr17 47062370 47063152 PREDICTED: exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-] nan K16599
gene-evm.TU.Chr17.1697 rna-evm.model.Chr17.1697 Chr17 47080943 47142726 PREDICTED: male-specific lethal 1 GO:0005515;GO:0007165 K08332
gene-evm.TU.Chr17.1699 rna-evm.model.Chr17.1699 Chr17 47221735 47222064 PREDICTED: zinc finger MYM-type protein 2-like nan nan
gene-evm.TU.Chr17.17 rna-evm.model.Chr17.17 Chr17 676674 711542 PREDICTED: LPXTG cell wall anchor domain-containing protein nan K12047
gene-evm.TU.Chr17.170 rna-evm.model.Chr17.170 Chr17 5228843 5230334 PREDICTED: Protein unc-13 homolog C nan K24353
gene-evm.TU.Chr17.1702 rna-evm.model.Chr17.1702 Chr17 47392752 47397953 uncharacterized protein nan nan
gene-evm.TU.Chr17.1703 rna-evm.model.Chr17.1703 Chr17 47411381 47414452 PREDICTED: Zinc finger and BTB domain-containing protein 17 GO:0003676 K09230
gene-evm.TU.Chr17.1704 rna-evm.model.Chr17.1704 Chr17 47488366 47491880 PREDICTED: Protein REDUCED WALL ACETYLATION 3 nan K03377
gene-evm.TU.Chr17.1706 rna-evm.model.Chr17.1706 Chr17 47622349 47643521 PREDICTED: peripheral myelin protein 22 GO:0016020 K24190
gene-evm.TU.Chr17.1707 rna-evm.model.Chr17.1707 Chr17 47660844 47661293 PREDICTED: protein kinase D [EC:2.7.11.13] nan nan

For more detailed data, you can explore the Download section to access the full dataset.