CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr17.1683 rna-evm.model.Chr17.1683 Chr17 46710749 46715165 PREDICTED: Uncharacterized protein PFD1115c nan K14590
gene-evm.TU.Chr17.1684 rna-evm.model.Chr17.1684.1 Chr17 46715215 46740865 PREDICTED: myb-like protein X nan K18575
gene-evm.TU.Chr17.1685 rna-evm.model.Chr17.1685.1 Chr17 46742151 46779348 PREDICTED: Solute carrier organic anion transporter family member 4C1 GO:0005215;GO:0005515;GO:0016020;GO:0055085 K14355
gene-evm.TU.Chr17.1686 rna-evm.model.Chr17.1686 Chr17 46793410 46800903 PREDICTED: DBH-like monooxygenase protein 1 homolog GO:0004497;GO:0005507;GO:0016715;GO:0055114 K00503
gene-evm.TU.Chr17.1687 rna-evm.model.Chr17.1687 Chr17 46820295 46826775 uncharacterized protein nan nan
gene-evm.TU.Chr17.1688 rna-evm.model.Chr17.1688 Chr17 46831606 46832733 PREDICTED: Transposable element Tc1 transposase GO:0003677;GO:0006313;GO:0015074 K07494
gene-evm.TU.Chr17.169 rna-evm.model.Chr17.169 Chr17 5206094 5210498 uncharacterized protein nan K27163
gene-evm.TU.Chr17.1691 rna-evm.model.Chr17.1691 Chr17 46869766 46876127 uncharacterized protein nan nan
gene-evm.TU.Chr17.1693 rna-evm.model.Chr17.1693 Chr17 46947243 46947704 uncharacterized protein nan nan
gene-evm.TU.Chr17.1694 rna-evm.model.Chr17.1694 Chr17 46967689 46996543 PREDICTED: Sodium-dependent glucose transporter 1 GO:0016020;GO:0055085 K08175

For more detailed data, you can explore the Download section to access the full dataset.