CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr17.1661 rna-evm.model.Chr17.1661 Chr17 46089361 46089696 PREDICTED: DNA topoisomerase I, mitochondrial-like nan K16338
gene-evm.TU.Chr17.1662 rna-evm.model.Chr17.1662 Chr17 46089783 46120268 PREDICTED: Elongin-A GO:0005634;GO:0006357;GO:0070449 K15076
gene-evm.TU.Chr17.1663 rna-evm.model.Chr17.1663 Chr17 46129678 46133141 PREDICTED: Putative peptidyl-tRNA hydrolase PTRHD1 GO:0004045 K05969
gene-evm.TU.Chr17.1664 rna-evm.model.Chr17.1664 Chr17 46134823 46144480 uncharacterized protein nan K19012
gene-evm.TU.Chr17.1665 rna-evm.model.Chr17.1665 Chr17 46160577 46164599 PREDICTED: serine protease inhibitor Cvsi-2-like nan K04622
gene-evm.TU.Chr17.1666 rna-evm.model.Chr17.1666 Chr17 46176369 46202144 PREDICTED: Putative inhibitor of apoptosis nan K04725
gene-evm.TU.Chr17.1667 rna-evm.model.Chr17.1667 Chr17 46203216 46221285 PREDICTED: Deleted in malignant brain tumors 1 protein GO:0005044;GO:0016020 K13912
gene-evm.TU.Chr17.1668 rna-evm.model.Chr17.1668 Chr17 46223444 46237379 PREDICTED: Asialoglycoprotein receptor 1 nan K10059
gene-evm.TU.Chr17.1669 rna-evm.model.Chr17.1669 Chr17 46243639 46247630 PREDICTED: Coadhesin (Fragment) nan K08619
gene-evm.TU.Chr17.1670 rna-evm.model.Chr17.1670 Chr17 46251621 46255237 uncharacterized protein nan K06497

For more detailed data, you can explore the Download section to access the full dataset.