CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr17.1627 rna-evm.model.Chr17.1627 Chr17 45947758 45950494 PREDICTED: Carbohydrate sulfotransferase 8 GO:0008146;GO:0016020;GO:0016051 K09673
gene-evm.TU.Chr17.163 rna-evm.model.Chr17.163 Chr17 5124094 5130219 PREDICTED: 17-beta-hydroxysteroid dehydrogenase 13 nan K15734
gene-evm.TU.Chr17.1638 rna-evm.model.Chr17.1638 Chr17 45996806 45997189 PREDICTED: Putative apoptosis inhibitor ORF99 nan K04725
gene-evm.TU.Chr17.1639 rna-evm.model.Chr17.1639 Chr17 46002908 46003573 PREDICTED: Deoxycytidine kinase nan K05961
gene-evm.TU.Chr17.164 rna-evm.model.Chr17.164 Chr17 5144381 5145536 PREDICTED: Probable RNA-directed DNA polymerase from transposon BS nan K14530
gene-evm.TU.Chr17.1641 rna-evm.model.Chr17.1641 Chr17 46006130 46006909 PREDICTED: Serine/threonine-protein kinase pim-3 GO:0004672;GO:0005524;GO:0006468 K08806
gene-evm.TU.Chr17.1649 rna-evm.model.Chr17.1649 Chr17 46019529 46020254 PREDICTED: Probable serine/threonine protein kinase IREH1 GO:0004672;GO:0005524;GO:0006468 K08282
gene-evm.TU.Chr17.1659 rna-evm.model.Chr17.1659 Chr17 45961946 46087810 PREDICTED: Transcription elongation factor B polypeptide 3 GO:0005634 K15076
gene-evm.TU.Chr17.166 rna-evm.model.Chr17.166 Chr17 5185369 5199389 uncharacterized protein nan nan
gene-evm.TU.Chr17.1660 rna-evm.model.Chr17.1660 Chr17 46088339 46088761 uncharacterized protein nan K20565

For more detailed data, you can explore the Download section to access the full dataset.