CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr17.1614 rna-evm.model.Chr17.1614 Chr17 45711068 45711706 PREDICTED: death-associated protein kinase [EC:2.7.11.1] nan nan
gene-evm.TU.Chr17.1615 rna-evm.model.Chr17.1615 Chr17 45713269 45714426 PREDICTED: Neuronal acetylcholine receptor subunit alpha-9-II GO:0004888;GO:0005216;GO:0005230;GO:0006811;GO:0016020;GO:0034220 K04814
gene-evm.TU.Chr17.1618 rna-evm.model.Chr17.1618 Chr17 45752358 45755089 PREDICTED: vomeronasal 2 receptor GO:0003677;GO:0006310;GO:0015074 K04763
gene-evm.TU.Chr17.1619 rna-evm.model.Chr17.1619 Chr17 45755224 45755844 PREDICTED: myotubularin-related protein 10/11/12 nan K24089
gene-evm.TU.Chr17.162 rna-evm.model.Chr17.162 Chr17 4943767 5054875 PREDICTED: Neuroendocrine convertase 2 GO:0004252;GO:0006508 K08671
gene-evm.TU.Chr17.1620 rna-evm.model.Chr17.1620 Chr17 45756815 45758167 PREDICTED: protocadherin-15 GO:0046872 K14323
gene-evm.TU.Chr17.1623 rna-evm.model.Chr17.1623 Chr17 45783711 45796223 PREDICTED: serine-rich adhesin for platelets-like nan nan
gene-evm.TU.Chr17.1624 rna-evm.model.Chr17.1624 Chr17 45892797 45921909 PREDICTED: Zinc transporter ZIP10 GO:0016020;GO:0030001;GO:0046873;GO:0055085 K14710
gene-evm.TU.Chr17.1625 rna-evm.model.Chr17.1625 Chr17 45932610 45938017 PREDICTED: Complement C1q-like protein 4 nan K23284
gene-evm.TU.Chr17.1626 rna-evm.model.Chr17.1626 Chr17 45938045 45946832 PREDICTED: Otolin-1 nan K23284

For more detailed data, you can explore the Download section to access the full dataset.