CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr17.1599 rna-evm.model.Chr17.1599 Chr17 45079227 45079904 PREDICTED: exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-] nan K16487
gene-evm.TU.Chr17.16 rna-evm.model.Chr17.16 Chr17 644179 667785 PREDICTED: ATP-dependent RNA helicase DDX54 GO:0003676;GO:0003723;GO:0003724;GO:0005524;GO:0005634 K14808
gene-evm.TU.Chr17.1600 rna-evm.model.Chr17.1600 Chr17 45121127 45122440 PREDICTED: Neuropeptide S receptor GO:0004930;GO:0007186;GO:0016020 K04194
gene-evm.TU.Chr17.1602 rna-evm.model.Chr17.1602 Chr17 45223872 45242856 PREDICTED: Neuropeptide S receptor GO:0004930;GO:0007186;GO:0016020 K04194
gene-evm.TU.Chr17.1606 rna-evm.model.Chr17.1606 Chr17 45369617 45371451 PREDICTED: Neuropeptide S receptor GO:0004930;GO:0007186;GO:0016020 K04194
gene-evm.TU.Chr17.1609 rna-evm.model.Chr17.1609 Chr17 45588492 45590651 PREDICTED: Neuronal acetylcholine receptor subunit alpha-3 GO:0004888;GO:0005216;GO:0005230;GO:0006811;GO:0016020;GO:0034220 K04808
gene-evm.TU.Chr17.161 rna-evm.model.Chr17.161 Chr17 4932914 4939529 PREDICTED: Collectin-12 nan K10059
gene-evm.TU.Chr17.1610 rna-evm.model.Chr17.1610.3 Chr17 45600724 45636291 PREDICTED: Neurofascin GO:0005515 K06756
gene-evm.TU.Chr17.1612 rna-evm.model.Chr17.1612 Chr17 45664674 45665539 PREDICTED: Sodium-coupled monocarboxylate transporter 2 nan K14386
gene-evm.TU.Chr17.1613 rna-evm.model.Chr17.1613 Chr17 45673061 45673926 PREDICTED: Sodium-coupled monocarboxylate transporter 2 nan K14386

For more detailed data, you can explore the Download section to access the full dataset.