CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr17.1589 rna-evm.model.Chr17.1589 Chr17 44926555 44939963 PREDICTED: Gamma-1-syntrophin GO:0005198;GO:0005515 K24065
gene-evm.TU.Chr17.159 rna-evm.model.Chr17.159 Chr17 4910379 4914388 uncharacterized protein nan nan
gene-evm.TU.Chr17.1590 rna-evm.model.Chr17.1590 Chr17 44939983 44952308 PREDICTED: EF-hand domain-containing protein 1 GO:0005509 K23029
gene-evm.TU.Chr17.1591 rna-evm.model.Chr17.1591 Chr17 44954299 44954862 uncharacterized protein nan K07136
gene-evm.TU.Chr17.1592 rna-evm.model.Chr17.1592 Chr17 44967353 44970608 uncharacterized protein nan K11244
gene-evm.TU.Chr17.1593 rna-evm.model.Chr17.1593 Chr17 44973424 44982072 PREDICTED: Uncharacterized protein CXorf38 homolog nan K22615
gene-evm.TU.Chr17.1594 rna-evm.model.Chr17.1594 Chr17 44989172 44992458 PREDICTED: Elongation factor 1-alpha nan K03231
gene-evm.TU.Chr17.1595 rna-evm.model.Chr17.1595 Chr17 45006760 45030423 PREDICTED: conserved Plasmodium protein, unknown function nan K11290
gene-evm.TU.Chr17.1596 rna-evm.model.Chr17.1596 Chr17 45033615 45041728 PREDICTED: Carbohydrate sulfotransferase 8 GO:0008146;GO:0016020;GO:0016051 K09673
gene-evm.TU.Chr17.1597 rna-evm.model.Chr17.1597 Chr17 45048604 45054761 PREDICTED: Failed axon connections homolog nan K21106

For more detailed data, you can explore the Download section to access the full dataset.