CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr17.1576 rna-evm.model.Chr17.1576 Chr17 44516447 44532388 PREDICTED: Neuropeptides capa receptor GO:0004930;GO:0007186;GO:0016020 K04238
gene-evm.TU.Chr17.1577 rna-evm.model.Chr17.1577 Chr17 44524998 44525819 PREDICTED: exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-] nan K16599
gene-evm.TU.Chr17.1578 rna-evm.model.Chr17.1578 Chr17 44537697 44542887 PREDICTED: Dipeptidyl peptidase 1 GO:0004197;GO:0006508;GO:0008234;GO:0050790 K01275
gene-evm.TU.Chr17.1579 rna-evm.model.Chr17.1579 Chr17 44545354 44572186 PREDICTED: Neuroligin-4, Y-linked nan K07378
gene-evm.TU.Chr17.158 rna-evm.model.Chr17.158 Chr17 4880698 4882511 uncharacterized protein nan K24605
gene-evm.TU.Chr17.1580 rna-evm.model.Chr17.1580 Chr17 44572368 44574029 uncharacterized protein nan nan
gene-evm.TU.Chr17.1582 rna-evm.model.Chr17.1582 Chr17 44592807 44622513 PREDICTED: Rho GTPase-activating protein 18 GO:0007165 K20639
gene-evm.TU.Chr17.1583 rna-evm.model.Chr17.1583 Chr17 44644856 44665954 PREDICTED: MFS-type transporter SLC18B1 GO:0016020;GO:0055085 K08161
gene-evm.TU.Chr17.1584 rna-evm.model.Chr17.1584 Chr17 44667494 44708169 PREDICTED: Ectonucleotide pyrophosphatase/phosphodiesterase family member 5 GO:0003824;GO:0016020;GO:0055085 K18398
gene-evm.TU.Chr17.1586 rna-evm.model.Chr17.1586 Chr17 44813296 44814154 PREDICTED: Putative nuclease HARBI1 nan K23222

For more detailed data, you can explore the Download section to access the full dataset.