CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr17.1563 rna-evm.model.Chr17.1563 Chr17 43941799 43943204 PREDICTED: Orexin receptor type 2 GO:0004930;GO:0007186;GO:0016020 K04238
gene-evm.TU.Chr17.1564 rna-evm.model.Chr17.1564 Chr17 43955346 44028173 PREDICTED: Structural maintenance of chromosomes flexible hinge domain-containing protein 1 GO:0005515;GO:0005524;GO:0005694;GO:0006302;GO:0051276 K23113
gene-evm.TU.Chr17.1565 rna-evm.model.Chr17.1565 Chr17 44043258 44074134 PREDICTED: Perlucin-like protein nan K06560
gene-evm.TU.Chr17.1566 rna-evm.model.Chr17.1566 Chr17 44191186 44281010 PREDICTED: Neuromedin-U receptor 1 GO:0004930;GO:0007186;GO:0016020 K04194
gene-evm.TU.Chr17.157 rna-evm.model.Chr17.157 Chr17 4840025 4866223 PREDICTED: Glutaminase kidney isoform, mitochondrial GO:0004359;GO:0005515;GO:0006541 K01425
gene-evm.TU.Chr17.1570 rna-evm.model.Chr17.1570 Chr17 44404161 44425327 PREDICTED: Adenylate kinase GO:0004017;GO:0005524;GO:0006139;GO:0019205 K00944
gene-evm.TU.Chr17.1572 rna-evm.model.Chr17.1572 Chr17 44442753 44443903 PREDICTED: GTP-binding protein Di-Ras2 GO:0003924;GO:0005525;GO:0007165;GO:0016020 K07841
gene-evm.TU.Chr17.1573 rna-evm.model.Chr17.1573 Chr17 44450810 44466203 PREDICTED: Protein usf GO:0016787 K01061
gene-evm.TU.Chr17.1574 rna-evm.model.Chr17.1574 Chr17 44483963 44489546 PREDICTED: Coiled-coil domain-containing protein 43 nan K11365
gene-evm.TU.Chr17.1575 rna-evm.model.Chr17.1575 Chr17 44501458 44502450 PREDICTED: Neuropeptides capa receptor GO:0004930;GO:0007186;GO:0016020 K04238

For more detailed data, you can explore the Download section to access the full dataset.