CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr17.1551 rna-evm.model.Chr17.1551 Chr17 43586287 43605696 PREDICTED: Uncharacterized protein YqjL nan K01055
gene-evm.TU.Chr17.1552 rna-evm.model.Chr17.1552 Chr17 43609346 43617396 PREDICTED: Quinone reductase GO:0016491 K15932
gene-evm.TU.Chr17.1553 rna-evm.model.Chr17.1553 Chr17 43621453 43644055 PREDICTED: WD repeat-containing protein 48 GO:0005515 K15361
gene-evm.TU.Chr17.1554 rna-evm.model.Chr17.1554 Chr17 43653239 43684894 PREDICTED: Solute carrier organic anion transporter family member 2B1 GO:0005215;GO:0016020;GO:0055085 K14352
gene-evm.TU.Chr17.1556 rna-evm.model.Chr17.1556 Chr17 43708404 43708781 PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:3.6.4.-] nan K10887
gene-evm.TU.Chr17.1559 rna-evm.model.Chr17.1559 Chr17 43812042 43814484 PREDICTED: Foot protein 1 variant 1 nan K17513
gene-evm.TU.Chr17.156 rna-evm.model.Chr17.156 Chr17 4817854 4832135 PREDICTED: Sodium/potassium-transporting ATPase subunit beta-1-interacting protein 4 nan K22735
gene-evm.TU.Chr17.1560 rna-evm.model.Chr17.1560 Chr17 43823493 43850430 PREDICTED: Lectin nan K10059
gene-evm.TU.Chr17.1561 rna-evm.model.Chr17.1561 Chr17 43859653 43928229 PREDICTED: NPC intracellular cholesterol transporter 1 GO:0016020 K12385
gene-evm.TU.Chr17.1562 rna-evm.model.Chr17.1562 Chr17 43935464 43938324 PREDICTED: Putative amidohydrolase YtcJ nan K07047

For more detailed data, you can explore the Download section to access the full dataset.