CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr17.1538 rna-evm.model.Chr17.1538 Chr17 43342954 43343770 uncharacterized protein GO:0000256;GO:0050385 K01483
gene-evm.TU.Chr17.1539 rna-evm.model.Chr17.1539 Chr17 43345818 43349179 PREDICTED: Ureidoglycolate lyase GO:0000256;GO:0050385 K01483
gene-evm.TU.Chr17.154 rna-evm.model.Chr17.154 Chr17 4777386 4803881 PREDICTED: Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 GO:0005509 K24469
gene-evm.TU.Chr17.1540 rna-evm.model.Chr17.1540 Chr17 43363744 43366155 uncharacterized protein nan K08622
gene-evm.TU.Chr17.1541 rna-evm.model.Chr17.1541 Chr17 43369677 43374206 PREDICTED: protein giant-lens (argos) nan K02104
gene-evm.TU.Chr17.1542 rna-evm.model.Chr17.1542 Chr17 43378378 43401495 PREDICTED: Signal transducing adapter molecule 1 GO:0005515;GO:0006886 K04705
gene-evm.TU.Chr17.1543 rna-evm.model.Chr17.1543 Chr17 43412194 43430061 PREDICTED: Signal peptide, CUB and EGF-like domain-containing protein 2 GO:0005509 K24468
gene-evm.TU.Chr17.1545_evm.TU.Chr17.1544 rna-evm.model.Chr17.1545_evm.model.Chr17.1544 Chr17 43473399 43522246 PREDICTED: Sushi repeat-containing protein SRPX2 GO:0005509 K24469
gene-evm.TU.Chr17.1546 rna-evm.model.Chr17.1546 Chr17 43541331 43552319 PREDICTED: Adenylate kinase GO:0005524;GO:0006139;GO:0019205 K00944
gene-evm.TU.Chr17.1549 rna-evm.model.Chr17.1549 Chr17 43574107 43575670 PREDICTED: Neurogenic locus notch-like protein 1 nan K19018

For more detailed data, you can explore the Download section to access the full dataset.