CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr17.1523 rna-evm.model.Chr17.1523 Chr17 42898739 42924445 PREDICTED: RCC1-like G exchanging factor-like protein nan K23495
gene-evm.TU.Chr17.1526 rna-evm.model.Chr17.1526.3 Chr17 43101954 43121655 PREDICTED: Zinc finger protein 536 GO:0003676 K09214
gene-evm.TU.Chr17.1527 rna-evm.model.Chr17.1527 Chr17 43119745 43133816 PREDICTED: Sal-like protein 1 GO:0003676 K24502
gene-evm.TU.Chr17.1528 rna-evm.model.Chr17.1528 Chr17 43184781 43214779 PREDICTED: Calmodulin-like protein 1 GO:0005509 K02183
gene-evm.TU.Chr17.153 rna-evm.model.Chr17.153 Chr17 4771343 4775324 PREDICTED: Sushi, nidogen and EGF-like domain-containing protein 1 GO:0005509 K24469
gene-evm.TU.Chr17.1532 rna-evm.model.Chr17.1532 Chr17 43230508 43231896 PREDICTED: Uncharacterized protein R718 nan nan
gene-evm.TU.Chr17.1533 rna-evm.model.Chr17.1533 Chr17 43233343 43248731 PREDICTED: Serine/threonine-protein kinase RIO3 GO:0004674;GO:0005524 K08872
gene-evm.TU.Chr17.1534 rna-evm.model.Chr17.1534 Chr17 43315343 43322936 PREDICTED: Cathepsin B GO:0004197;GO:0006508;GO:0008234;GO:0050790 K01363
gene-evm.TU.Chr17.1535 rna-evm.model.Chr17.1535 Chr17 43327515 43328590 PREDICTED: Ureidoglycolate lyase GO:0000256;GO:0050385 K01483
gene-evm.TU.Chr17.1536 rna-evm.model.Chr17.1536 Chr17 43331914 43337963 PREDICTED: Ureidoglycolate lyase GO:0000256;GO:0050385 K01483

For more detailed data, you can explore the Download section to access the full dataset.