CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr17.1485 rna-evm.model.Chr17.1485 Chr17 41999326 42043985 PREDICTED: Tumor protein D54 nan K08757
gene-evm.TU.Chr17.1486 rna-evm.model.Chr17.1486 Chr17 42051072 42064808 PREDICTED: Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 GO:0006487;GO:0008250;GO:0016020 K12667
gene-evm.TU.Chr17.1487 rna-evm.model.Chr17.1487 Chr17 42086424 42091544 PREDICTED: C-type lectin domain family 10 member A nan K10063
gene-evm.TU.Chr17.1488 rna-evm.model.Chr17.1488 Chr17 42097908 42108305 PREDICTED: Mariner Mos1 transposase nan K09671
gene-evm.TU.Chr17.1490 rna-evm.model.Chr17.1490 Chr17 42125334 42143685 uncharacterized protein nan K16669
gene-evm.TU.Chr17.1491 rna-evm.model.Chr17.1491 Chr17 42144114 42160079 PREDICTED: astacin-like metalloendopeptidase [EC:3.4.-.-] nan K09608
gene-evm.TU.Chr17.1493 rna-evm.model.Chr17.1493 Chr17 42196324 42203521 uncharacterized protein nan K21066
gene-evm.TU.Chr17.1494 rna-evm.model.Chr17.1494 Chr17 42208516 42208878 PREDICTED: Putative apoptosis inhibitor ORF99 nan K16061
gene-evm.TU.Chr17.1496 rna-evm.model.Chr17.1496 Chr17 42209984 42210193 uncharacterized protein nan nan
gene-evm.TU.Chr17.15 rna-evm.model.Chr17.15 Chr17 617069 642106 PREDICTED: mRNA-capping enzyme GO:0004484;GO:0006370;GO:0008138;GO:0016311;GO:0016791 K13917

For more detailed data, you can explore the Download section to access the full dataset.