CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr17.1473 rna-evm.model.Chr17.1473 Chr17 41699777 41701896 PREDICTED: Caprin-2 nan K24236
gene-evm.TU.Chr17.1475 rna-evm.model.Chr17.1475 Chr17 41712682 41721671 PREDICTED: Glucocorticoid modulatory element-binding protein 2 GO:0003677;GO:0003713;GO:0005634 K24505
gene-evm.TU.Chr17.1476 rna-evm.model.Chr17.1476 Chr17 41730604 41750312 PREDICTED: Exocyst complex component 3 GO:0000145;GO:0006887 K06110
gene-evm.TU.Chr17.1478 rna-evm.model.Chr17.1478 Chr17 41854945 41856330 PREDICTED: protein kinase D [EC:2.7.11.13] nan K19533
gene-evm.TU.Chr17.148 rna-evm.model.Chr17.148 Chr17 4691583 4692047 PREDICTED: luc7-like protein 3 nan K13165
gene-evm.TU.Chr17.1480 rna-evm.model.Chr17.1480 Chr17 41890534 41904120 PREDICTED: Solute carrier organic anion transporter family member 4C1 GO:0005215;GO:0005515;GO:0016020;GO:0055085 K14355
gene-evm.TU.Chr17.1481 rna-evm.model.Chr17.1481 Chr17 41916583 41927470 PREDICTED: Chitinase domain-containing protein 1 GO:0005975;GO:0008061 K17525
gene-evm.TU.Chr17.1482 rna-evm.model.Chr17.1482 Chr17 41947950 41969795 PREDICTED: Fucolectin nan nan
gene-evm.TU.Chr17.1483 rna-evm.model.Chr17.1483 Chr17 41973829 41977534 PREDICTED: deleted in malignant brain tumors 1 protein nan K06817
gene-evm.TU.Chr17.1484 rna-evm.model.Chr17.1484 Chr17 41984861 41992733 PREDICTED: Splicing factor 3B subunit 6 GO:0003676 K12833

For more detailed data, you can explore the Download section to access the full dataset.