CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr17.1459 rna-evm.model.Chr17.1459 Chr17 41429102 41432711 PREDICTED: Monocarboxylate transporter 6 GO:0016020;GO:0055085 K08190
gene-evm.TU.Chr17.1460 rna-evm.model.Chr17.1460 Chr17 41464841 41473697 PREDICTED: Monocarboxylate transporter 6 GO:0016020;GO:0055085 K08190
gene-evm.TU.Chr17.1461 rna-evm.model.Chr17.1461 Chr17 41475630 41501795 PREDICTED: Monocarboxylate transporter 6 GO:0016020;GO:0055085 K08180
gene-evm.TU.Chr17.1462 rna-evm.model.Chr17.1462 Chr17 41504154 41506706 PREDICTED: Transmembrane protein 205 nan K15744
gene-evm.TU.Chr17.1463 rna-evm.model.Chr17.1463 Chr17 41509448 41512458 PREDICTED: Monocarboxylate transporter 1 GO:0016020;GO:0055085 K08190
gene-evm.TU.Chr17.1464 rna-evm.model.Chr17.1464 Chr17 41532806 41533060 uncharacterized protein nan nan
gene-evm.TU.Chr17.1468 rna-evm.model.Chr17.1468 Chr17 41589046 41595520 PREDICTED: Tumor susceptibility gene 101 protein GO:0036211;GO:0015031 K12183
gene-evm.TU.Chr17.147 rna-evm.model.Chr17.147 Chr17 4653739 4691553 PREDICTED: PHD finger protein 3 GO:0005515;GO:0006351;GO:0016817;GO:0097190 K17596
gene-evm.TU.Chr17.1471 rna-evm.model.Chr17.1471 Chr17 41659469 41660155 PREDICTED: exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-] nan K24394
gene-evm.TU.Chr17.1472 rna-evm.model.Chr17.1472 Chr17 41667786 41688107 PREDICTED: SPRY domain-containing protein 3 GO:0005515 K23334

For more detailed data, you can explore the Download section to access the full dataset.